In Silico Study of Flavonoids Against Helix pomatia agglutinin Targeting Gut Microbiota
DOI:
https://doi.org/10.70130/Abstract
Flavonoids have critical roles in a wide range of pharmacological, beauty products, neutraceutical, as well as medicinal uses. These have been shown for their cancer-fighting qualities, including antioxidants, anti-inflammatory properties, blood lipid-lowering, including cholesterol-lowering effects. The present paper describes a chemical binding investigation involving flavonoids and Helix pomatia agglutinin (PDB ID: 2CGZ). The results from a computational docking molecular investigation of such variants to investigate the binding affinity, residual interaction, and hydrogen bonding of various polyphenols towards Helix pomatia agglutinin are presented. Flavonoids have a binding attraction value ranging from -5.8 to -6.1 Kcal/mol. The present study indicated that flavonoids could be useful in colon cancer by targeting the bacteria in the intestines, resulting in the production of strong anticancer drugs.
References
(1) Arafa, R. K.; Hegazy, G. H.; Piazza, G. A.; Abadi, A. H. Synthesis and in vitro antiproliferative effect of novel quinoline-based potential anticancer agents. European Journal of Medicinal Chemistry 2013, 63, 826-832. DOI: 10.1016/j.ejmech.2013.03.008.
(2) Sharma, S. M., Pankaj and Singh Shivendra. Natural Existence and Bioactivity of Flavonoids: Synthetic Strategies and Mechanistic Pathways. Mini-Reviews in Organic Chemistry 2024.
(3) Pietta, P.-G. Flavonoids as antioxidants. Journal of natural products 2000, 63 (7), 1035-1042.
(4) Chemistry, S. S. J. o. M.; undefined. Molecular docking study for binding affinity of Indole derivatives against solution structure of the antimicrobial peptide Btd-2. pubs.thesciencein.org 2024 (1), 686-686.
(5) Funakoshi-Tago, M.; Nakamura, K.; Tago, K.; Mashino, T.; Kasahara, T. Anti-inflammatory activity of structurally related flavonoids, Apigenin, Luteolin and Fisetin. International Immunopharmacology 2011, 11 (9), 1150-1159. DOI: 10.1016/j.intimp.2011.03.012.
(6) Zeng, W.; Jin, L.; Zhang, F.; Zhang, C.; Liang, W. Naringenin as a potential immunomodulator in therapeutics. Pharmacological Research 2018, 135, 122-126. DOI: 10.1016/J.PHRS.2018.08.002.
(7) Ungar, Y.; Osundahunsi, O. F.; Shimoni, E. Thermal stability of genistein and daidzein and its effect on their antioxidant activity. Journal of Agricultural and Food Chemistry 2003, 51 (15), 4394-4399. DOI: 10.1021/jf034021z.
(8) Lee, Y. J.; Wu, T. D. Total synthesis of kaempferol and methylated kaempferol derivatives. Journal of the Chinese Chemical Society 2001, 48 (2), 201-206.
(9) Dar, R. A.; Naikoo, G. A.; Hassan, I. U.; Shaikh, A. M. H. Electrochemical behavior of kaempferol and its determination in presence of quercetin employing multi-walled carbon nanotube modified carbon paste electrode. Analytical Chemistry Research 2016, 7, 1-8. DOI: 10.1016/j.ancr.2015.11.002.
(10) Lescar, J.; Sanchez, J.-F.; Audfray, A.; Coll, J.-L.; Breton, C.; Mitchell, E. P.; Imberty, A. Structural basis for recognition of breast and colon cancer epitopes Tn antigen and Forssman disaccharide by Helix pomatia lectin. Glycobiology 2007, 17 (10), 1077-1083.
(11) Trott, O.; Olson, A. J. AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, effcient optimization and multithreading. Journal of Computational Chemistry 2010, 31 (2), 455-461.
(12) Biovia, D. S. Discovery studio visualizer. San Diego, CA, USA 2017, 936.-936.
(13) Dzoyem, J. P.; Tchamgoue, J.; Tchouankeu, J. C.; Kouam, S. F.; Choudhary, M. I.; Bakowsky, U. Antibacterial activity and cytotoxicity of flavonoids compounds isolated from Pseudarthria hookeri Wight & Arn. (Fabaceae). South African Journal of Botany 2018, 114, 100-103. DOI: 10.1016/j.sajb.2017.11.001.
(14) Iranshahi, M.; Rezaee, R.; Parhiz, H.; Roohbakhsh, A.; Soltani, F. Protective effects of flavonoids against microbes and toxins: The cases of hesperidin and hesperetin. In Life Sciences, Elsevier Inc.: 2015; Vol. 137, pp 125-132.
(15) Sánchez, I.; Gómez-Garibay, F.; Taboada, J.; Ruiz, B. H. Antiviral Effect of Flavonoids on the Dengue Virus; 2000.
(16) Patil, V. M.; Masand, N. Anticancer Potential of Flavonoids: Chemistry, Biological Activities, and Future Perspectives. In Studies in Natural Products Chemistry, Vol. 59; Elsevier B.V., 2018; pp 401-430.
Published
Data Availability Statement
- All the data is available in the Department of Applied Chemistry, Amity School of Applied Sciences, Amity University Madhya Pradesh, India.
License
Copyright (c) 2026 RSYN Chemical Sciences

This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.